MRIQC: individual T1w report

Summary

Subject ID: 027_ExercisePre.
Date and time: 2018-05-06, 20:41.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.27573602985695034
cnr			4.700596181449917
efc			0.5797054464259158
fber			101.15534973144531
fwhm	avg		3.879123333333333
fwhm	x		3.80052
fwhm	y		4.07271
fwhm	z		3.76414
icvs	csf		0.17936223123040873
icvs	gm		0.4866035457745121
icvs	wm		0.3340342229950792
inu	med		0.9809685349464417
inu	range		0.2803493916988372
qi	1		0.0
qi	2		0.0010879532575583596
rpve	csf		29.820759617441258
rpve	gm		12.860594848944968
rpve	wm		20.8154174531778
size	x		180
size	y		256
size	z		256
snr	csf		2.4846175185063393
snr	gm		10.073499780245042
snr	total		11.282774458473552
snr	wm		21.290206076669275
snrd	csf		14.94835872235685
snrd	gm		34.03937522525508
snrd	total		34.390566301560234
snrd	wm		54.183964957068774
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.9059995730092663
summary	bg	mad	12.091054916381836
summary	bg	mean	47.788169860839844
summary	bg	median	47.01874923706055
summary	bg	n	2567387.0
summary	bg	p05	29.046434593200683
summary	bg	p95	69.49286193847655
summary	bg	stdv	12.661697387695312
summary	csf	k	0.35731920260451044
summary	csf	mad	115.48574829101562
summary	csf	mean	294.09539794921875
summary	csf	median	275.8836669921875
summary	csf	n	15097.0
summary	csf	p05	142.82301635742186
summary	csf	p95	489.87861328124967
summary	csf	stdv	111.03299713134766
summary	gm	k	0.10496456373573482
summary	gm	mad	61.40601348876953
summary	gm	mean	631.17724609375
summary	gm	median	628.2233276367188
summary	gm	n	49941.0
summary	gm	p05	533.6472778320312
summary	gm	p95	739.4221801757812
summary	gm	stdv	62.36333465576172
summary	wm	k	1.2376664291332764
summary	wm	mad	41.108280181884766
summary	wm	mean	995.7000732421875
summary	wm	median	1000.0075073242188
summary	wm	n	161769.0
summary	wm	p05	909.6682739257812
summary	wm	p95	1063.8825439453126
summary	wm	stdv	46.97016143798828
tpm	overlap	csf	0.22733435034751892
tpm	overlap	gm	0.5479221940040588
tpm	overlap	wm	0.5423957705497742
wm2max			0.6195212363153308

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	ca33a7903d3bf962f46c04ec7002b4e6
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.