MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.27573602985695034
cnr4.700596181449917
efc0.5797054464259158
fber101.15534973144531
fwhmavg3.879123333333333
fwhmx3.80052
fwhmy4.07271
fwhmz3.76414
icvscsf0.17936223123040873
icvsgm0.4866035457745121
icvswm0.3340342229950792
inumed0.9809685349464417
inurange0.2803493916988372
qi10.0
qi20.0010879532575583596
rpvecsf29.820759617441258
rpvegm12.860594848944968
rpvewm20.8154174531778
sizex180
sizey256
sizez256
snrcsf2.4846175185063393
snrgm10.073499780245042
snrtotal11.282774458473552
snrwm21.290206076669275
snrdcsf14.94835872235685
snrdgm34.03937522525508
snrdtotal34.390566301560234
snrdwm54.183964957068774
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.9059995730092663
summarybgmad12.091054916381836
summarybgmean47.788169860839844
summarybgmedian47.01874923706055
summarybgn2567387.0
summarybgp0529.046434593200683
summarybgp9569.49286193847655
summarybgstdv12.661697387695312
summarycsfk0.35731920260451044
summarycsfmad115.48574829101562
summarycsfmean294.09539794921875
summarycsfmedian275.8836669921875
summarycsfn15097.0
summarycsfp05142.82301635742186
summarycsfp95489.87861328124967
summarycsfstdv111.03299713134766
summarygmk0.10496456373573482
summarygmmad61.40601348876953
summarygmmean631.17724609375
summarygmmedian628.2233276367188
summarygmn49941.0
summarygmp05533.6472778320312
summarygmp95739.4221801757812
summarygmstdv62.36333465576172
summarywmk1.2376664291332764
summarywmmad41.108280181884766
summarywmmean995.7000732421875
summarywmmedian1000.0075073242188
summarywmn161769.0
summarywmp05909.6682739257812
summarywmp951063.8825439453126
summarywmstdv46.97016143798828
tpmoverlapcsf0.22733435034751892
tpmoverlapgm0.5479221940040588
tpmoverlapwm0.5423957705497742
wm2max0.6195212363153308

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumca33a7903d3bf962f46c04ec7002b4e6
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.